A large number of open-source software packages as well as CNRM licensed software packages are available to all users as system software. Preinstalled software packages available to users are listed below:

Open-source software

• ABINIT
• AlphaFold
• AmberTools
• Atomic Simulation Environment
• AutodocVINA
• BLAST
• Blender
• Bowtie 2
• Burrows-Wheeler Aligner
• CalculiX
• CP2K
• deal.II
• Eigen
• FreeCAD
• FreeFEM
• GROMACS
• kallisto
• LAMMPS
• NWChem
• OpenFOAM ESI
• OpenFOAM EXTEND
• OpenFOAM ORG
• ParaView
• PLUMED
• PyTorch
• Quantum ESPRESSO
• ROOT
• rDock/RxDock
• Rosetta
• SAMtools
• Singularity
• STAR
• TensorFlow
• TopHat
• Trans-ABySS
• Weather Research and Forecasting Model

Proprietary software

• Altair AcuSolve
• Altair nanoFluidX
• Altair OptiStruct
• Altair Radioss
• Altair ultraFluidX
• DIRAC
• GAMESS
• GROMOS
• MATLAB
• MOMAP
• NAMD
• VAPOR
• VMD

 
Software installation
Additional software support may be provided upon request. In order to install proprietary software, users must have the appropriate licenses for supercomputer environment. In general, software packages must be Linux-compatible and compatible with Red Hat Enterprise Linux 7.

Software development
Several research groups at the University of Rijeka have been developing scientific software for their own research as well as for various projects for which supercomputing specialized software is required. These groups belong to various University departments:

• Department of Biotechnology, Biomolecular Structure and Function Laboratory, led by doc. dr. sc. Željko Svedružić
• Department of Physics, Laboratory for Astroparticle Physics, led by doc. dr. sc. Tomislav Terzić
• Faculty of Engineering, Department of Fluid Mechanics and Computational Engineering, led by izv. prof. dr. sc. Lado Kranjčević